Reports and Preprints

See also Grant Proposal Text

See also Online Journal Articles

Papers still requested for which copies may be hard to find

1. Older papers: 1975-90

Human_Evol_Trees.pdf
Added Jan 2007; Linked here April 2016
Thompson E.A. (1975) Human Evolutionary Trees. Cambridge University Press. Scanned PDF.
ahg75_thompson.pdf
Added, April 2016
Thompson E.A. (1975) The estimation of pairwise relationships. Ann,HumGenet 39: 173-188 Scanned PDF.
tpb83_kp_donnelly.pdf
Added, April 2016
(with permission from KPD)
Donnelly, K. P. (1983) The probability that related individuals share some section of genome identical by descent. Theor.Pop. Biol. 23: 34-63 Scanned PDF.
imaj_crossover_87.ps
imaj_crossover_87.pdf
Added July 2004
Thompson E.A. (1988). Crossover counts and likelihood in multipoint linkage analysis
I.M.A. J. Math. Appl. in Med and Biol. 4: 93-108.
(This paper is still requested, but no reprints remain:
Only these not-so-good copies could be created from old files)
PostScript and PDF.
No figures.
Tables squiffed.
imaj_two_three_loc.88.ps.Z
imaj_two_three_loc.88.pdf
Scanned full print copy
Scanned Figure 2: quadruple 2nd cousins
Thompson E.A. (1988). Two-locus and three-locus gene identity by descent in pedigrees.
I.M.A. J. Math. Appl. in Med and Biol. 5: 261-280.
(This paper is still requested, but no reprints remain;
Be aware full scanned copy is 11 MB)
Converted to PDF, and PDF version added, Apr 2010.
Also scanned version added, and Figure 2

2. Papers of the 1990s

ascer_rept.93.ps.Z Thompson, E. A. (1993). Sampling and ascertainment in genetic epidemiology; a tutorial review. Technical report No. 243, Department of Statistics, University of Washington. without figures
biom_50_years.96.ps.Z Thompson, E. A. (1996). Statistical Genetics. Chapter 14 in: Advances in Biometry: The last 50 years. P. Armitage and H. David (eds.) Wiley: New York. Pp. 263-285. .
froyal_genomes.89.ps.Z Thompson, E. A. (1995). Genetic importance and genomic descent. In: Population Management for Survival & Recovery. J.D.Ballou, M. Gilpin, and T.J.Foose (eds.) Proceedings of the 1989 Front Royal Workshop on Analytical Methods for Population Viability Analyses Pp. 112-123. Columbia University Press, New York. (This is a paper originally presented at the Front Royal meeting in 1989. The version here is an intermediate version -- the final changes were made only in hard copy.) .
genepi_mcmc_rept.95.ps.Z Thompson, E. A. (1995). Monte Carlo in Genetic Analysis. Technical report No. 294, Department of Statistics, University of Washington. Incorporating notes from Wageningen (May 1994) and Copenhagen (May-June, 1995) courses. Full text, with figures.
gibbs_docum.94.ps.Z Thompson, E.A. (1994). Monte Carlo programs for Pedigree Analysis. Technical report No. 267, Department of Statistics, University of Washington.
The majority of this software is available in the directory PANGAEA/MORGAN_V1.1; for details see readme_pangaea.
.
imaj_montelik.91.ps.Z Thompson, E. A. and Guo, S-W. (1991). Evaluation of likelihood ratios for complex genetic models. I.M.A. J. Math. Appl. Med. & Biol., 8: 149-169. (This paper is still requested, but no reprints remain) .
interface_94.ps.gz
interface_94.pdf.gz
(PDF file added Nov,2000)
Thompson, E.A. (1994). Monte Carlo estimation of multilocus autozygosity probabilities. Proceedings of the 1994 Interface conference J. Sall and A. Lehman (eds.) Pp. 498-506. Interface Foundation of North America: Fairfax Station, VA. Interface '94 paper; full text as final. gzipped PostScript and PDF files
sing4.pdf
(PDF file uploaded July 2007)
Thompson, E.A. (1994). MCMC in the analysis of genetic data on pedigrees. In Markov Chain Monte Carlo: Innovations and Applications. Pp. 183--216. F. Liang, J-S Wang, and W. Kendall (eds). Lecture Note Series of the IMS, National University of Singapore. World Scientific Co Pte Ltd, Singapore. Singapore workshop paper; full text as final. PDF file

Included are two technical reports relating to MCMC in Genetic Analysis. One is a technical report containing program documentation (1993 version), and the other is a 1995 technical report of lecture notes on this topic, based on courses and lectures given at Wageningen (May, 1994), Copenhagen (May 1995), Montreal (June 1995) and Adelaide (August, 1995).

3. More recent papers

2001 Book Chapter; PDF file, August 2016 Chapman, N, H, and Thompson E. A. (2001) Linkage disequilibrium mapping: The role of population history, size, and structure. In Advances in Genetics, Vol 42: Genetic Dissection of Complex Traits D.C.Rao and M.A.Province (eds). Pp. 413--437. Academic Press: San Diego, CA.
2009 ISI paper; PDF file, Sept 2009 Thompson, E.A. (2009). Inferring coancestry of genome segments in populations ISI Invited paper; final version
2011 ISI paper; PDF file, August 2011 Thompson, E.A. and Glazner, C. G. (2011). Inferring coancestry of genome segments in populations ISI contributed paper
Next: more preprints will be added if there is demand.

Grant Proposal Text

nih_grant.89.ps.Z Postscript, Compressed The genetic epidemiology
of complex traits.
Text of 1989 NIH grant proposal, scientific sections.
nih_grant.94.ps.Z Postscript, Compressed The genetic epidemiology
of complex traits.
Text of 1994 NIH grant renewal, scientific sections.
nih_grant.98.ps.Z Postscript, Compressed The genetic epidemiology
of complex traits.
Text of 1998 NIH grant renewal, scientific sections.
nih_grant_03.ps.gz Postscript, gzipped The genetic epidemiology
of complex traits.
Text of 2003 NIH grant renewal, scientific sections.
nih07_science.pdf
nih07_literature.pdf
PDF files The genetic epidemiology
of complex traits.
Text of 2007 NIH grant renewal,
Scientific Sections and Literature Cited.
nih09_science.pdf PDF file The genetic epidemiology
of complex traits: ARRA Supplement.
Text of 2009 ARRA Supplement
Scientific Sections and Literature Cited.
See also 2009 ISI paper
nih_2011_science.pdf PDF file P01 (Weir); Project 4 (Thompson)
Resolving complex traits through inferred coancestry of genome segments
Text of 2011 P01 Project 4
Scientific Sections and Literature Cited.
See also 2009 ISI paper
merit_2011_science.pdf PDF file The genetic epidemiology
of complex traits.
Text of 2012 NIH MERIT Extension report.
Scientific Sections and Literature Cited.